6 problems
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The Meaning of Life conjecture on the conservation of a 42-base vertebrate sequence
The “Meaning of Life” conjecture. The sequence was present in the genome of the ancestor of all vertebrates, and it has been completely conserved to the present time: none of its b…
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The square-root optimality-region conjecture for sequence alignment
Let be the number of optimality regions in the parameter space of the sequence-alignment model, with both sequences having length . An optimality…
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The full Hausdorff-distance extension conjecture for alignment theorems
Let and denote extremal alignments, let be the restricted Hausdorff distance, and let be the full Hausdorff distance. Full Hausdorff-distance extension…
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The full Hausdorff-distance conjecture for extremal alignments
Let and denote the extremal alignments, let be the restricted Hausdorff distance between them, and let be the full Hausdorff distance. Suppose the sourc…
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The optimal-alignment variation conjecture for sequence relatedness
Let and be two sequences, and let their optimal alignments be the alignments attaining the optimal sequence-alignment score. Optimal-alignment variation conjecture. The var…
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Piecewise computability conjecture for optimal alignment processes under the -risk
Piecewise computability conjecture. The dynamic programming algorithm for finding the minimizer of the -risk, together with exponential smoothing, could be used to find…