11 problems
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Simplex-code optimality conjecture for the DNA coverage depth problem
Simplex-code optimality conjecture. Then solves Problem. The paper reports experimental evidence that simplex codes perform best among all codes with the same paramet…
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Exponential-size conjecture for address sequences satisfying constraints C1–C4
Exponential-size conjecture. The number of such sequences is exponential in .
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Conjecture on the asymptotic ratios in the weight-1 and weight-2 construction
Let and be the numerically determined optimal proportions of weight- and weight- columns, and let…
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Conjecture on the absence of a closed form for the optimal degree distribution
For each finite , let denote the unique optimum of the convex optimization problem defining the minimum random access expectation. Closed-form nonexistence co…
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The universal hyperbolic bound for block-structured coded retrieval
Universal hyperbolic bound. For any partition with ,
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Shomorony's short-molecule DNA storage log-cardinality conjecture
In the short-molecule regime, let be the number of molecules, the molecule length, the length parameter, and the input alphabet. The log-cardinality of a…
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Optimal rate–reliability trade-off for consensus-based reconstruction of MDS-coded strands
For each strand index , noisy reads are aggregated by base-by-base majority voting over to form a consensus sequence…
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The uniform marginal distribution conjecture for optimal random-access codes
Consider matrices over a finite field whose columns have prescribed Hamming weights, and let denote the maximum expected number of sampled columns needed to span a st…
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The BSGY rate-1/2 random-access expectation conjecture
Let the rate- code family constructed by the authors of BSGY24 have block dimension and random-access expectation measured by the relevant quantity . BSGY rate-1/2 c…
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General capacity formula for arbitrary multi-draw DNA storage channels
General capacity conjecture. The capacity of an arbitrary multi-draw DNA storage channel is
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Support conjecture for capacity-achieving codon distributions
Support conjecture. A probability mass function with support in may be capacity-achieving for the side-informed cDNA data-embedding channel; equivalently, the capaci…