The tropical rank conjecture for binary phylogenetic tree models
The tropical rank conjecture for binary phylogenetic tree models
Let be a binary tree on binary random variables, let be the associated multilinear map, and let be its prime ideal. For a table, flattening along a split of the leaves means arranging its entries as a matrix whose rows and columns are indexed by the assignments on the two parts of the split. The tropical rank conjecture. The map is surjectively positive for , and the tropical variety, respectively the positive tropical variety, of coincides with the set of all tables whose flattenings along the splits of have tropical rank, respectively Barvinok rank, at most . The claim is presented as a tropical extension of the determinantal description of the phylogenetic model; the source does not provide a resolution.
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Primary source
Lior Pachter and Bernd Sturmfels, “Tropical Geometry of Statistical Models”, arXiv:q-bio/0311009 (2004).
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