The tropical rank conjecture for binary phylogenetic tree models

From papers

Let τ\tau be a binary tree on binary random variables, let ff be the associated multilinear map, and let IfI_f be its prime ideal. For a 2××22 \times \cdots \times 2 table, flattening along a split of the leaves means arranging its entries as a matrix whose rows and columns are indexed by the assignments on the two parts of the split. The tropical rank conjecture. The map ff is surjectively positive for l=2l=2, and the tropical variety, respectively the positive tropical variety, of IfI_f coincides with the set of all 2×2××22 \times 2 \times \cdots \times 2 tables (uσ1σn)(u_{\sigma_1 \cdots \sigma_n}) whose flattenings along the splits of τ\tau have tropical rank, respectively Barvinok rank, at most 22. The claim is presented as a tropical extension of the determinantal description of the phylogenetic model; the source does not provide a resolution.

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Primary source

Lior Pachter and Bernd Sturmfels, “Tropical Geometry of Statistical Models”, arXiv:q-bio/0311009 (2004).

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