Unbounded vertices conjecture for arbitrary-tree phylogenetic polytopes

Let TT be a rooted tree, let AT{\mathcal A}_T be the configuration of exponent vectors from the toric parametrization, and let PTP_T be the convex hull of the columns of AT{\mathcal A}_T. As TT ranges over arbitrary trees, the number of vertices of PTP_T should be unbounded. The paper contrasts this with the conjectured boundedness for binary trees and supports the assertion with computations, including a 15-node tree whose polytope has 34 vertices; a general proof is not supplied.

Sources & referencesView supporting material

Primary source

Nicholas Eriksson, “Toric ideals of homogeneous phylogenetic models”, arXiv:math/0401175 (2004).

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