The finite-character-subset conjecture for perfect phylogenies

Let XX be a finite set of taxa. An rr-state character on XX is a partition of XX into at most rr states. A set CC of characters is compatible if there is a tree on XX that displays every character in CC; such a tree is a perfect phylogeny for CC.

Finite-character-subset conjecture. For each positive integer rr, there exists an integer f(r)f(r) such that, for any finite set XX and any set CC of rr-state characters on XX, CC is compatible if and only if every subset of at most f(r)f(r) characters in CC is compatible.

This conjecture formalizes the question of whether compatibility can always be determined by checking character subsets of bounded size, independently of the total number of characters. The paper states that the conjecture is false, so it is refuted.

Sources & referencesView supporting material

Primary source

Leo van Iersel, Mark Jones and Steven Kelk, “A third strike against perfect phylogeny”, arXiv:1804.07232 (2019).

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