Sparsity conjecture for the cryo-EM covariance matrix blocks
Sparsity conjecture for the cryo-EM covariance matrix blocks
Let be a block of the matrix arising in the covariance-based cryo-electron microscopy algorithm, with its associated frequency indices. Let denote the number of nonzero entries of a matrix . Sparsity conjecture. The number of nonzero entries satisfies
The squared factor is the total number of entries in , so the conjecture asserts that the proportion of nonzero entries decreases with the frequencies. Numerical experiments support this sparsity pattern, but the paper states that it remains to be verified theoretically; it leads to the claimed storage complexity for the largest block.
Sources & referencesView supporting material
Primary source
Gene Katsevich, Alexander Katsevich and Amit Singer, “Covariance Matrix Estimation for the Cryo-EM Heterogeneity Problem”, arXiv:1309.1737 (2014).
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