Sparsity conjecture for the cryo-EM covariance matrix blocks

Let L^k1,k2\hat L^{k_1,k_2} be a block of the matrix L^\hat L arising in the covariance-based cryo-electron microscopy algorithm, with k1,k2k_1,k_2 its associated frequency indices. Let nnz(A)\operatorname{nnz}(A) denote the number of nonzero entries of a matrix AA. Sparsity conjecture. The number of nonzero entries satisfies

nnz(L^k1,k2)1k1+k2+1((k1+1)(k1+2)(k2+1)(k2+2)4)2.\operatorname{nnz}(\hat L^{k_1,k_2})\leq \frac{1}{k_1+k_2+1}\left(\frac{(k_1+1)(k_1+2)(k_2+1)(k_2+2)}{4}\right)^2.

The squared factor is the total number of entries in L^k1,k2\hat L^{k_1,k_2}, so the conjecture asserts that the proportion of nonzero entries decreases with the frequencies. Numerical experiments support this sparsity pattern, but the paper states that it remains to be verified theoretically; it leads to the claimed O(Nres7)O(N_{\mathrm{res}}^7) storage complexity for the largest block.

Sources & referencesView supporting material

Primary source

Gene Katsevich, Alexander Katsevich and Amit Singer, “Covariance Matrix Estimation for the Cryo-EM Heterogeneity Problem”, arXiv:1309.1737 (2014).

Progress summary

Never refreshed

Nothing recorded yet. Refresh searches the literature and the public web for attempts on this problem, and writes the first summary here.

Solutions 0

No solutions have been posted yet.