Conjecture PC5 on hereditary maximum parsimony trees

Let S:=f1f2fnS:=f_1f_2\ldots f_n be a sequence of characters (an alignment) on a set XX of taxa, with X=m|X|=m, and let T\mathcal{T} be a maximum parsimony tree for SS. For a subset YXY\subseteq X, write SYS|_Y for the sequence restricted to the taxa in YY, and TY\mathcal{T}|_Y for the tree restricted to YY. Conjecture PC5. For each k=4,,m1k=4,\ldots,m-1, there exists a subset YY of XX with Y=k|Y|=k such that TY\mathcal{T}|_Y is a maximum parsimony tree for SYS|_Y. This conjecture asks whether every maximum parsimony tree has most-parsimonious restrictions at every intermediate number of taxa; the cases of one, two, and three taxa are excluded because their unrooted trees are unique. The paper investigates this heredity property through examples of maximum parsimony trees and presents the conjecture as an open question.

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Primary source

Mareike Fischer, “Non-hereditary maximum parsimony trees”, arXiv:1007.3964 (2010).

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